Citation: Xi Zhang, Yuanyuan Li, Chen Huan, Yubao Hou, Rujia Liu, Hongyun Shi, Peng Zhang, Baisong Zheng, Yingchao Wang, Hong Wang, Wenyan Zhang. LncRNA NKILA inhibits HBV replication by repressing NF-κB signalling activation .VIROLOGICA SINICA, 2024, 39(1) : 44-55.  http://dx.doi.org/10.1016/j.virs.2023.10.002

LncRNA NKILA inhibits HBV replication by repressing NF-κB signalling activation

  • Hepatitis B virus (HBV) infection results in liver cirrhosis and hepatocellular carcinoma (HCC). HBx/nuclear factor (NF)-κB pathway plays a role in HBV replication. However, whether NF-κB-interacting long noncoding RNA (NKILA), a suppressor of NF-κB activation, regulates HBV replication remains largely unknown. In this study, gain-and-loss experiments showed that NKILA inhibited HBV replication by inhibiting NF-κB activity. In turn, HBV infection down-regulated NKILA expression. In addition, expression levels of NKILA were lower in the peripheral blood-derived monocytes (PBMCs) of HBV-positive patients than in healthy individuals, which were correlated with HBV viral loads. And a negative correlation between NKILA expression level and HBV viral loads was observed in blood serum from HBV-positive patients. Lower levels of endogenous NKILA were also observed in HepG2 cells expressing a 1.3-fold HBV genome, HBV-infected HepG2-NTCP cells, stable HBV-producing HepG2.2.15 and HepAD38 cells, compared to those HBV-negative cells. Furthermore, HBx was required for NKILA-mediated inhibition on HBV replication. NKILA decreased HBx-induced NF-κB activation by interrupting the interaction between HBx and p65, whereas NKILA mutants lack of essential domains for NF-κB inhibition, lost the ability to inhibit HBV replication. Together, our data demonstrate that NKILA may serve as a suppressor of HBV replication via NF-κB signalling.

  • 加载中
    1. Affo, S., Yu, L. X. & Schwabe, R. F. 2017. The role of cancer-associated fibroblasts and fibrosis in liver cancer. Annu. Rev. Pathol., 12, 153-186.

    2. Ayub, A., Ashfaq, U. A. & Haque, A. 2013. HBV induced HCC: major risk factors from genetic to molecular level. BioMed Res. Int., 2013, 810461.

    3. Belloni, L., Pollicino, T., DE Nicola, F., Guerrieri, F., Raffa, G., Fanciulli, M., Raimondo, G. & Levrero, M. 2009. Nuclear HBx binds the HBV minichromosome and modifies the epigenetic regulation of cccDNA function. Proc Natl Acad Sci U S A, 106, 19975-19979.

    4. Bhan, A., Soleimani, M. & Mandal, S. S. 2017. Long noncoding RNA and cancer: a new paradigm. Cancer Res., 77, 3965-3981.

    5. Bian, D., Gao, C., Bao, K. & Song, G. 2017. The long non-coding RNA NKILA inhibits the invasion-metastasis cascade of malignant melanoma via the regulation of NF-kB. Am. J. Cancer Res., 7, 28-40.

    6. Bird, L. 2018. lncRNA NKILA: a killer regulator. Nat. Rev. Immunol., 18, 666-667.

    7. Bui-Nguyen, T. M., Pakala, S. B., Sirigiri, R. D., Xia, W., Hung, M. C., Sarin, S. K., Kumar, V., Slagle, B. L. & Kumar, R. 2010. NF-kappaB signaling mediates the induction of MTA1 by hepatitis B virus transactivator protein HBx. Oncogene, 29, 1179-1189.

    8. Chen, J., Zhang, W., Lin, J., Wang, F., Wu, M., Chen, C., Zheng, Y., Peng, X., Li, J. & Yuan, Z. 2014. An efficient antiviral strategy for targeting hepatitis B virus genome using transcription activator-like effector nucleases. Mol. Ther., 22, 303-311.

    9. Chen, R., Cheng, Q., Owusu-Ansah, K. G., Song, G., Jiang, D., Zhou, L., Xu, X., Wu, J. & Zheng, S. 2020. NKILA, a prognostic indicator, inhibits tumor metastasis by suppressing NF-kappaB/Slug mediated epithelial-mesenchymal transition in hepatocellular carcinoma. Int. J. Biol. Sci., 16, 495-503.

    10. Chong, C. K., Cheng, C. Y. S., Tsoi, S. Y. J., Huang, F. Y., Liu, F., Seto, W. K., Lai, C. L., Yuen, M. F. & Wong, D. K. 2017. Role of hepatitis B core protein in HBV transcription and recruitment of histone acetyltransferases to cccDNA minichromosome. Antivir. Res., 144, 1-7.

    11. Dijkstra, J. M. & Alexander, D. B. 2015. The " NF-k B interacting long noncoding RNA" (NKILA) transcript is antisense to cancer-associated gene PMEPA1. F1000Res, 4, 96.

    12. Du, Y., Su, T., Ding, Y. & Cao, G. 2012. Effects of antiviral therapy on the recurrence of hepatocellular carcinoma after curative resection or liver transplantation. Hepat. Mon., 12, e6031.

    13. Duan, L., Wu, R., Zhang, X., Wang, D., You, Y., Zhang, Y., Zhou, L. & Chen, W. 2018. HBx-induced S100A9 in NF-kappaB dependent manner promotes growth and metastasis of hepatocellular carcinoma cells. Cell Death Dis., 9, 629.

    14. Feng, G. X., Li, J., Yang, Z., Zhang, S. Q., Liu, Y. X., Zhang, W. Y., Ye, L. H. & Zhang, X. D. 2017. Hepatitis B virus X protein promotes the development of liver fibrosis and hepatoma through downregulation of miR-30e targeting P4HA2 mRNA. Oncogene, 36, 6895-6905.

    15. Feng, J., Yang, G., Liu, Y., Gao, Y., Zhao, M., Bu, Y., Yuan, H., Yuan, Y., Yun, H., Sun, M., Gao, H., Zhang, S., Liu, Z., Yin, M., Song, X., Miao, Z., Lin, Z. & Zhang, X. 2019. LncRNA PCNAP1 modulates hepatitis B virus replication and enhances tumor growth of liver cancer. Theranostics, 9, 5227-5245.

    16. Hoesel, B. & Schmid, J. A. 2013. The complexity of NF-kappaB signaling in inflammation and cancer. Mol. Cancer, 12, 86.

    17. Hsieh, Y. H., Su, I. J., Yen, C. J., Tsai, T. F., Tsai, H. W., Tsai, H. N., Huang, Y. J., Chen, Y. Y., Ai, Y. L., Kao, L. Y., Hsieh, W. C., Wu, H. C. & Huang, W. 2013. Histone deacetylase inhibitor suberoylanilide hydroxamic acid suppresses the pro-oncogenic effects induced by hepatitis B virus pre-S2 mutant oncoprotein and represents a potential chemopreventive agent in high-risk chronic HBV patients. Carcinogenesis, 34, 475-485.

    18. Huan, C., Li, Z., Ning, S., Wang, H., Yu, X. F. & Zhang, W. 2018. Long noncoding RNA uc002yug.2 activates HIV-1 latency through regulation of mRNA levels of various RUNX1 isoforms and increased tat expression. J. Virol., 92.

    19. Huang, G., Li, P. P., Lau, W. Y., Pan, Z. Y., Zhao, L. H., Wang, Z. G., Wang, M. C. & Zhou, W. P. 2018. Antiviral therapy reduces hepatocellular carcinoma recurrence in patients with low HBV-DNA levels: a randomized controlled trial. Ann. Surg., 268, 943-954.

    20. Huang, W., Cui, X., Chen, J., Feng, Y., Song, E., Li, J. & Liu, Y. 2016. Long non-coding RNA NKILA inhibits migration and invasion of tongue squamous cell carcinoma cells via suppressing epithelial-mesenchymal transition. Oncotarget, 7, 62520-62532.

    21. Ji, J., Ding, K., Luo, T., Xu, R., Zhang, X., Huang, B., Chen, A., Zhang, D., Miletic, H., Bjerkvig, R., Thorsen, F., Wang, J. & Li, X. 2020. PMEPA1 isoform a drives progression of glioblastoma by promoting protein degradation of the Hippo pathway kinase LATS1. Oncogene, 39, 1125-1139.

    22. Jiang, M., Zhang, S., Yang, Z., Lin, H., Zhu, J., Liu, L., Wang, W., Liu, S., Liu, W., Ma, Y., Zhang, L. & Cao, X. 2018. Self-recognition of an inducible host lncRNA by RIG-I feedback restricts innate immune response. Cell, 173, 906-919 e13.

    23. Kakumani, P. K., Guitart, T., Houle, F., Harvey, L. M., Goyer, B., Germain, L., Gebauer, F. & Simard, M. J. 2021. CSDE1 attenuates microRNA-mediated silencing of PMEPA1 in melanoma. Oncogene, 40, 3231-3244.

    24. Ladner, S. K., Otto, M. J., Barker, C. S., Zaifert, K., Wang, G. H., Guo, J. T., Seeger, C. & King, R. W. 1997. Inducible expression of human hepatitis B virus (HBV) in stably transfected hepatoblastoma cells: a novel system for screening potential inhibitors of HBV replication. Antimicrob. Agents Chemother., 41, 1715-1720.

    25. Lamontagne, R. J., Bagga, S. & Bouchard, M. J. 2016. Hepatitis B virus molecular biology and pathogenesis. Hepatoma Res, 2, 163-186.

    26. Lei, Y., Xu, X., Liu, H., Chen, L., Zhou, H., Jiang, J., Yang, Y. & Wu, B. 2021. HBx induces hepatocellular carcinogenesis through ARRB1-mediated autophagy to drive the G1/S cycle. Autophagy, 17, 4423-4441.

    27. Levrero, M., Pollicino, T., Petersen, J., Belloni, L., Raimondo, G. & Dandri, M. 2009. Control of cccDNA function in hepatitis B virus infection. J. Hepatol., 51, 581-592.

    28. Li, J., Chen, C., Ma, X., Geng, G., Liu, B., Zhang, Y., Zhang, S., Zhong, F., Liu, C., Yin, Y., Cai, W. & Zhang, H. 2016a. Long noncoding RNA NRON contributes to HIV-1 latency by specifically inducing tat protein degradation. Nat. Commun., 7, 11730.

    29. Li, Z., Zhao, X., Jiang, P., Xiao, S., Wu, G., Chen, K., Zhang, X., Liu, H., Han, X., Wang, S. & Li, X. 2016b. HBV is a risk factor for poor patient prognosis after curative resection of hepatocellular carcinoma: a retrospective case-control study. Medicine (Baltim.), 95, e4224.

    30. Liu, B., Sun, L., Liu, Q., Gong, C., Yao, Y., Lv, X., Lin, L., Yao, H., Su, F., Li, D., Zeng, M. & Song, E. 2015. A cytoplasmic NF-kappaB interacting long noncoding RNA blocks IkappaB phosphorylation and suppresses breast cancer metastasis. Cancer Cell, 27, 370-381.

    31. Liu, R., Zhou, Z., Huang, J. & Chen, C. 2011. PMEPA1 promotes androgen receptor-negative prostate cell proliferation through suppressing the Smad3/4-c-Myc-p21 Cip1 signaling pathway. J. Pathol., 223, 683-694.

    32. Lu, Z., Li, Y., Wang, J., Che, Y., Sun, S., Huang, J., Chen, Z. & He, J. 2017. Long non-coding RNA NKILA inhibits migration and invasion of non-small cell lung cancer via NF-kappaB/Snail pathway. J. Exp. Clin. Cancer Res., 36, 54.

    33. Majano, P., Lara-Pezzi, E., Lopez-Cabrera, M., Apolinario, A., Moreno-Otero, R. & Garcia-Monzon, C. 2001. Hepatitis B virus X protein transactivates inducible nitric oxide synthase gene promoter through the proximal nuclear factor kappaB-binding site: evidence that cytoplasmic location of X protein is essential for gene transactivation. Hepatology, 34, 1218-1224.

    34. Mulero, M. C., Huxford, T. & Ghosh, G. 2019. NF-kappaB, IkappaB, and IKK: integral components of immune system signaling. Adv. Exp. Med. Biol., 1172, 207-226.

    35. Nojima, T. & Proudfoot, N. J. 2022. Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics. Nat. Rev. Mol. Cell Biol., 23, 389-406.

    36. Oeckinghaus, A. & Ghosh, S. 2009. The NF-kappaB family of transcription factors and its regulation. Cold Spring Harbor Perspect. Biol., 1, a000034.

    37. Pollicino, T., Belloni, L., Raffa, G., Pediconi, N., Squadrito, G., Raimondo, G. & Levrero, M. 2006. Hepatitis B virus replication is regulated by the acetylation status of hepatitis B virus cccDNA-bound H3 and H4 histones. Gastroenterology, 130, 823-837.

    38. Riviere, L., Gerossier, L., Ducroux, A., Dion, S., Deng, Q., Michel, M. L., Buendia, M. A., Hantz, O. & Neuveut, C. 2015. HBx relieves chromatin-mediated transcriptional repression of hepatitis B viral cccDNA involving SETDB1 histone methyltransferase. J. Hepatol., 63, 1093-1102.

    39. Salerno, D., Chiodo, L., Alfano, V., Floriot, O., Cottone, G., Paturel, A., Pallocca, M., Plissonnier, M. L., Jeddari, S., Belloni, L., Zeisel, M., Levrero, M. & Guerrieri, F. 2020. Hepatitis B protein HBx binds the DLEU2 lncRNA to sustain cccDNA and host cancer-related gene transcription. Gut, 69, 2016-2024.

    40. Schiffer, J. T., Aubert, M., Weber, N. D., Mintzer, E., Stone, D. & Jerome, K. R. 2012. Targeted DNA mutagenesis for the cure of chronic viral infections. J. Virol., 86, 8920-8936.

    41. Sekiba, K., Otsuka, M., Funato, K., Miyakawa, Y., Tanaka, E., Seimiya, T., Yamagami, M., Tsutsumi, T., Okushin, K., Miyakawa, K., Ryo, A. & Koike, K. 2022. HBx-induced degradation of Smc5/6 complex impairs homologous recombination-mediated repair of damaged DNA. J. Hepatol., 76, 53-62.

    42. Shokri, S., Mahmoudvand, S., Taherkhani, R., Farshadpour, F. & Jalalian, F. A. 2019. Complexity on modulation of NF-kappaB pathways by hepatitis B and C: a double-edged sword in hepatocarcinogenesis. J. Cell. Physiol.

    43. Shukla, R., Yue, J., Siouda, M., Gheit, T., Hantz, O., Merle, P., Zoulim, F., Krutovskikh, V., Tommasino, M. & Sylla, B. S. 2011. Proinflammatory cytokine TNF-alpha increases the stability of hepatitis B virus X protein through NF-kappaB signaling. Carcinogenesis, 32, 978-985.

    44. Sohn, W., Paik, Y. H., Cho, J. Y., Ahn, J. M., Choi, G. S., Kim, J. M., Kwon, C. H., Joh, J. W., Sinn, D. H., Gwak, G. Y., Choi, M. S., Lee, J. H., Koh, K. C., Paik, S. W. & Yoo, B. C. 2015. Influence of hepatitis B virus reactivation on the recurrence of HBV-related hepatocellular carcinoma after curative resection in patients with low viral load. J. Viral Hepat., 22, 539-550.

    45. Song, W., Zheng, C., Liu, M., Xu, Y., Qian, Y., Zhang, Z., Su, H., Li, X., Wu, H., Gong, P., Li, Y. & Fan, H. 2021. TRERNA1 upregulation mediated by HBx promotes sorafenib resistance and cell proliferation in HCC via targeting NRAS by sponging miR-22-3p. Mol. Ther., 29, 2601-2616.

    46. Sunami, Y., Ringelhan, M., Kokai, E., Lu, M., O'Connor, T., Lorentzen, A., Weber, A., Rodewald, A. K., Mullhaupt, B., Terracciano, L., Gul, S., Wissel, S., Leithauser, F., Krappmann, D., Riedl, P., Hartmann, D., Schirmbeck, R., Strnad, P., Huser, N., Kleeff, J., Friess, H., Schmid, R. M., Geisler, F., Wirth, T. & Heikenwalder, M. 2016. Canonical NF-kappaB signaling in hepatocytes acts as a tumor-suppressor in hepatitis B virus surface antigen-driven hepatocellular carcinoma by controlling the unfolded protein response. Hepatology, 63, 1592-1607.

    47. Tan, Y. T., Lin, J. F., Li, T., Li, J. J., Xu, R. H. & Ju, H. Q. 2021. LncRNA-mediated posttranslational modifications and reprogramming of energy metabolism in cancer. Cancer Commun., 41, 109-120.

    48. Urabe, A., Imamura, M., Tsuge, M., Kan, H., Fujino, H., Fukuhara, T., Masaki, K., Kobayashi, T., Ono, A., Nakahara, T., Kawaoka, T., Hiramatsu, A., Kawakami, Y., Aikata, H., Hayes, C. N., Maki, N., Ohdan, H. & Chayama, K. 2017. The relationship between HBcrAg and HBV reinfection in HBV related post-liver transplantation patients. J. Gastroenterol., 52, 366-375.

    49. Vallabhapurapu, S. & Karin, M. 2009. Regulation and function of NF-kappaB transcription factors in the immune system. Annu. Rev. Immunol., 27, 693-733.

    50. Wang, H., Liu, Y., Huan, C., Yang, J., Li, Z., Zheng, B., Wang, Y. & Zhang, W. 2020. NF-kappaB-Interacting long noncoding RNA regulates HIV-1 replication and latency by repressing NF-kappaB signaling. J. Virol., 94.

    51. Wang, J., Zhang, Y., Li, Q., Zhao, J., Yi, D., Ding, J., Zhao, F., Hu, S., Zhou, J., Deng, T., Li, X., Guo, F., Liang, C. & Cen, S. 2019. Influenza virus exploits an interferon-independent lncRNA to preserve viral RNA synthesis through stabilizing viral RNA polymerase PB1. Cell Rep., 27, 3295-3304 e4.

    52. Wong, C. M., Tsang, F. H. & Ng, I. O. 2018. Non-coding RNAs in hepatocellular carcinoma: molecular functions and pathological implications. Nat. Rev. Gastroenterol. Hepatol., 15, 137-151.

    53. Wu, X., Cai, B., Lu, W., Fu, Y., Wei, B., Niu, Q., Su, Z., Li, Y. & Wang, L. 2021. HBV upregulated triggering receptor expressed on myeloid cells-1 (TREM-1) expression on monocytes participated in disease progression through NF-Kb pathway. Clin Immunol, 223, 108650.

    54. Xiang, W. Q., Feng, W. F., Ke, W., Sun, Z., Chen, Z. & Liu, W. 2011. Hepatitis B virus X protein stimulates IL-6 expression in hepatocytes via a MyD88-dependent pathway. J. Hepatol., 54, 26-33.

    55. Yang, T., Li, S., Liu, J., Yin, D., Yang, X. & Tang, Q. 2018. lncRNA-NKILA/NF-kappaB feedback loop modulates laryngeal cancer cell proliferation, invasion, and radioresistance. Cancer Med., 7, 2048-2063.

    56. Yoo, S., Wang, W., Wang, Q., Fiel, M. I., Lee, E., Hiotis, S. P. & Zhu, J. 2017. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med., 15, 214.

    57. Yu, X., Lan, P., Hou, X., Han, Q., Lu, N., Li, T., Jiao, C., Zhang, J., Zhang, C. & Tian, Z. 2017. HBV inhibits LPS-induced NLRP3 inflammasome activation and IL-1beta production via suppressing the NF-kappaB pathway and ROS production. J. Hepatol., 66, 693-702.

    58. Yu, X., Tang, W., Yang, Y., Tang, L., Dai, R., Pu, B., Feng, C. & Xia, J. 2018. Long noncoding RNA NKILA enhances the anti-cancer effects of baicalein in hepatocellular carcinoma via the regulation of NF-kappaB signaling. Chem. Biol. Interact., 285, 48-58.

    59. Yuan, H., Zhao, L., Yuan, Y., Yun, H., Zheng, W., Geng, Y., Yang, G., Wang, Y., Zhao, M. & Zhang, X. 2021. HBx represses WDR77 to enhance HBV replication by DDB1-mediated WDR77 degradation in the liver. Theranostics, 11, 8362-8378.

    60. Zhang, Q., Lenardo, M. J. & Baltimore, D. 2017. 30 Years of NF-kappaB: a blossoming of relevance to human pathobiology. Cell, 168, 37-57.

    61. Zhang, R., Li, J., Li, G., Jin, F., Wang, Z., Yue, R., Wang, Y., Wang, X. & Sun, Y. 2020. LncRNA Nron regulates osteoclastogenesis during orthodontic bone resorption. Int. J. Oral Sci., 12, 14.

    62. Zheng, B., Zhang, J., Zheng, T., Wang, H., Li, Z., Huan, C., Ning, S., Wang, Y. & Zhang, W. 2020. ATP1B3 cooperates with BST-2 to promote hepatitis B virus restriction. J. Med. Virol., 92, 201-209.

  • 加载中

Article Metrics

Article views(1158) PDF downloads(17) Cited by()

Related
Proportional views

    LncRNA NKILA inhibits HBV replication by repressing NF-κB signalling activation

      Corresponding author: Yingchao Wang, wangyingc@jlu.edu.cn
      Corresponding author: Hong Wang, wanghong_2020@jlu.edu.cn
      Corresponding author: Wenyan Zhang, zhangwenyan@jlu.edu.cn
    • a. Department of Infectious Diseases, Center of Infectious Diseases and Pathogen Biology, Key Laboratory of Organ Regeneration and Transplantation of the Ministry of Education, The First Hospital of Jilin University, Changchun, 130012, China;
    • b. Institute of Virology and AIDS Research, The First Hospital of Jilin University, Changchun, 130012, China;
    • c. Department of Ophthalmology, The First Hospital of Jilin University, Changchun, 130012, China;
    • d. Hepatobiliary Pancreatic Surgery, The First Hospital of Jilin University, Changchun, 130012, China

    Abstract: Hepatitis B virus (HBV) infection results in liver cirrhosis and hepatocellular carcinoma (HCC). HBx/nuclear factor (NF)-κB pathway plays a role in HBV replication. However, whether NF-κB-interacting long noncoding RNA (NKILA), a suppressor of NF-κB activation, regulates HBV replication remains largely unknown. In this study, gain-and-loss experiments showed that NKILA inhibited HBV replication by inhibiting NF-κB activity. In turn, HBV infection down-regulated NKILA expression. In addition, expression levels of NKILA were lower in the peripheral blood-derived monocytes (PBMCs) of HBV-positive patients than in healthy individuals, which were correlated with HBV viral loads. And a negative correlation between NKILA expression level and HBV viral loads was observed in blood serum from HBV-positive patients. Lower levels of endogenous NKILA were also observed in HepG2 cells expressing a 1.3-fold HBV genome, HBV-infected HepG2-NTCP cells, stable HBV-producing HepG2.2.15 and HepAD38 cells, compared to those HBV-negative cells. Furthermore, HBx was required for NKILA-mediated inhibition on HBV replication. NKILA decreased HBx-induced NF-κB activation by interrupting the interaction between HBx and p65, whereas NKILA mutants lack of essential domains for NF-κB inhibition, lost the ability to inhibit HBV replication. Together, our data demonstrate that NKILA may serve as a suppressor of HBV replication via NF-κB signalling.

    Reference (62) Relative (20)

    目录

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return